WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F28C6.4a.3 Sequence Name  F28C6.4a.3
Length (nt)  2349   Chromosome Location  II: 8596275-8599308
Chromosome . Primary Identifier  II Chromosome Location . Start  8596275
Chromosome Location . End  8599308 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F28C6.4a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009204 pigg-1 F28C6.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F28C6.4a F28C6.4a 2238   II: 8596300-8596483

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F28C6.4a.3 8596275 8599308 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon60800   209   II: 8596275-8596483 Caenorhabditis elegans
Exon60806   134   II: 8596536-8596669 Caenorhabditis elegans
Exon60809   223   II: 8596712-8596934 Caenorhabditis elegans
Exon60813   123   II: 8597118-8597240 Caenorhabditis elegans
Exon60817   158   II: 8597288-8597445 Caenorhabditis elegans
Exon60821   189   II: 8597492-8597680 Caenorhabditis elegans
Exon60825   170   II: 8597732-8597901 Caenorhabditis elegans
Exon60829   915   II: 8597950-8598864 Caenorhabditis elegans
Exon60833   115   II: 8599030-8599144 Caenorhabditis elegans
Exon60835   113   II: 8599196-8599308 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F28C6.4a.3 8596275 8599308 -1

1 Sequence

Length
2349

1 Sequence Ontology Term

Identifier Name Description
transcript