WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F28C6.4a.2 Sequence Name  F28C6.4a.2
Length (nt)  2350   Chromosome Location  II: 8596283-8599317
Chromosome . Primary Identifier  II Chromosome Location . Start  8596283
Chromosome Location . End  8599317 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F28C6.4a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009204 pigg-1 F28C6.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F28C6.4a F28C6.4a 2238   II: 8596300-8596483

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F28C6.4a.2 8596283 8599317 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon60801   201   II: 8596283-8596483 Caenorhabditis elegans
Exon60805   134   II: 8596536-8596669 Caenorhabditis elegans
Exon60808   223   II: 8596712-8596934 Caenorhabditis elegans
Exon60812   123   II: 8597118-8597240 Caenorhabditis elegans
Exon60816   158   II: 8597288-8597445 Caenorhabditis elegans
Exon60820   189   II: 8597492-8597680 Caenorhabditis elegans
Exon60824   170   II: 8597732-8597901 Caenorhabditis elegans
Exon60828   915   II: 8597950-8598864 Caenorhabditis elegans
Exon60832   115   II: 8599030-8599144 Caenorhabditis elegans
Exon60837   122   II: 8599196-8599317 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F28C6.4a.2 8596283 8599317 -1

1 Sequence

Length
2350

1 Sequence Ontology Term

Identifier Name Description
transcript