WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F28C6.4b.1 Sequence Name  F28C6.4b.1
Length (nt)  2333   Chromosome Location  II: 8596286-8599317
Chromosome . Primary Identifier  II Chromosome Location . Start  8596286
Chromosome Location . End  8599317 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F28C6.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009204 pigg-1 F28C6.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F28C6.4b F28C6.4b 2070   II: 8596454-8596483

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F28C6.4b.1 8596286 8599317 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon60802   198   II: 8596286-8596483 Caenorhabditis elegans
Exon60803   120   II: 8596536-8596655 Caenorhabditis elegans
Exon60810   223   II: 8596712-8596934 Caenorhabditis elegans
Exon60814   123   II: 8597118-8597240 Caenorhabditis elegans
Exon60818   158   II: 8597288-8597445 Caenorhabditis elegans
Exon60822   189   II: 8597492-8597680 Caenorhabditis elegans
Exon60826   170   II: 8597732-8597901 Caenorhabditis elegans
Exon60830   915   II: 8597950-8598864 Caenorhabditis elegans
Exon60834   115   II: 8599030-8599144 Caenorhabditis elegans
Exon60838   122   II: 8599196-8599317 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F28C6.4b.1 8596286 8599317 -1

1 Sequence

Length
2333

1 Sequence Ontology Term

Identifier Name Description
transcript