WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D2085.1.1 Sequence Name  D2085.1.1
Length (nt)  6931   Chromosome Location  II: 8651109-8658726
Chromosome . Primary Identifier  II Chromosome Location . Start  8651109
Chromosome Location . End  8658726 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D2085.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004259 pyr-1 D2085.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D2085.1 D2085.1 6597   II: 8651134-8651218

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:D2085.1.1 8651109 8658726 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon60983   110   II: 8651109-8651218 Caenorhabditis elegans
Exon60984   332   II: 8651265-8651596 Caenorhabditis elegans
Exon60985   401   II: 8651662-8652062 Caenorhabditis elegans
Exon60986   291   II: 8652182-8652472 Caenorhabditis elegans
Exon60987   382   II: 8652517-8652898 Caenorhabditis elegans
Exon60988   531   II: 8652950-8653480 Caenorhabditis elegans
Exon60989   626   II: 8653537-8654162 Caenorhabditis elegans
Exon60990   1421   II: 8654231-8655651 Caenorhabditis elegans
Exon60991   695   II: 8655700-8656394 Caenorhabditis elegans
Exon60992   447   II: 8656448-8656894 Caenorhabditis elegans
Exon60993   216   II: 8656940-8657155 Caenorhabditis elegans
Exon60994   729   II: 8657203-8657931 Caenorhabditis elegans
Exon60995   750   II: 8657977-8658726 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:D2085.1.1 8651109 8658726 1

1 Sequence

Length
6931

1 Sequence Ontology Term

Identifier Name Description
transcript