WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D2085.5d.1 Sequence Name  D2085.5d.1
Length (nt)  3760   Chromosome Location  II: 8669133-8677878
Chromosome . Primary Identifier  II Chromosome Location . Start  8669133
Chromosome Location . End  8677878 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D2085.5d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008430 hgap-2 D2085.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D2085.5d D2085.5d 3540   II: 8669353-8669461

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:D2085.5d.1 8669133 8677878 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon61029   329   II: 8669133-8669461 Caenorhabditis elegans
Exon61063   117   II: 8669511-8669627 Caenorhabditis elegans
Exon61086   166   II: 8669683-8669848 Caenorhabditis elegans
Exon61109   429   II: 8670176-8670604 Caenorhabditis elegans
Exon61132   248   II: 8670660-8670907 Caenorhabditis elegans
Exon61155   270   II: 8671360-8671629 Caenorhabditis elegans
Exon61178   82   II: 8671676-8671757 Caenorhabditis elegans
Exon61190   156   II: 8672050-8672205 Caenorhabditis elegans
Exon61197   117   II: 8672253-8672369 Caenorhabditis elegans
Exon61215   418   II: 8672707-8673124 Caenorhabditis elegans
Exon61238   123   II: 8673173-8673295 Caenorhabditis elegans
Exon61261   104   II: 8673617-8673720 Caenorhabditis elegans
Exon61284   399   II: 8673773-8674171 Caenorhabditis elegans
Exon61307   477   II: 8674225-8674701 Caenorhabditis elegans
Exon61329   138   II: 8674868-8675005 Caenorhabditis elegans
Exon61350   187   II: 8677692-8677878 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:D2085.5d.1 8669133 8677878 -1

1 Sequence

Length
3760

1 Sequence Ontology Term

Identifier Name Description
transcript