WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D2085.5g.3 Sequence Name  D2085.5g.3
Length (nt)  3774   Chromosome Location  II: 8669137-8675316
Chromosome . Primary Identifier  II Chromosome Location . Start  8669137
Chromosome Location . End  8675316 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D2085.5g.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008430 hgap-2 D2085.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D2085.5g D2085.5g 3297   II: 8669353-8669461

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:D2085.5g.3 8669137 8675316 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon61038   325   II: 8669137-8669461 Caenorhabditis elegans
Exon61068   117   II: 8669511-8669627 Caenorhabditis elegans
Exon61091   166   II: 8669683-8669848 Caenorhabditis elegans
Exon61114   429   II: 8670176-8670604 Caenorhabditis elegans
Exon61137   248   II: 8670660-8670907 Caenorhabditis elegans
Exon61160   270   II: 8671360-8671629 Caenorhabditis elegans
Exon61183   82   II: 8671676-8671757 Caenorhabditis elegans
Exon61194   156   II: 8672050-8672205 Caenorhabditis elegans
Exon61201   117   II: 8672253-8672369 Caenorhabditis elegans
Exon61220   418   II: 8672707-8673124 Caenorhabditis elegans
Exon61243   123   II: 8673173-8673295 Caenorhabditis elegans
Exon61266   104   II: 8673617-8673720 Caenorhabditis elegans
Exon61289   399   II: 8673773-8674171 Caenorhabditis elegans
Exon61312   477   II: 8674225-8674701 Caenorhabditis elegans
Exon61334   138   II: 8674868-8675005 Caenorhabditis elegans
Exon61342   205   II: 8675112-8675316 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:D2085.5g.3 8669137 8675316 -1

1 Sequence

Length
3774

1 Sequence Ontology Term

Identifier Name Description
transcript