WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D2085.5b.1 Sequence Name  D2085.5b.1
Length (nt)  5539   Chromosome Location  II: 8669137-8684924
Chromosome . Primary Identifier  II Chromosome Location . Start  8669137
Chromosome Location . End  8684924 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D2085.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008430 hgap-2 D2085.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D2085.5b D2085.5b 3024   II: 8669353-8669461

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:D2085.5b.1 8669137 8684924 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

23 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon61040   325   II: 8669137-8669461 Caenorhabditis elegans
Exon61053   117   II: 8669511-8669627 Caenorhabditis elegans
Exon61076   166   II: 8669683-8669848 Caenorhabditis elegans
Exon61099   429   II: 8670176-8670604 Caenorhabditis elegans
Exon61122   248   II: 8670660-8670907 Caenorhabditis elegans
Exon61145   270   II: 8671360-8671629 Caenorhabditis elegans
Exon61168   82   II: 8671676-8671757 Caenorhabditis elegans
Exon61205   418   II: 8672707-8673124 Caenorhabditis elegans
Exon61228   123   II: 8673173-8673295 Caenorhabditis elegans
Exon61251   104   II: 8673617-8673720 Caenorhabditis elegans
Exon61274   399   II: 8673773-8674171 Caenorhabditis elegans
Exon61297   477   II: 8674225-8674701 Caenorhabditis elegans
Exon61320   138   II: 8674868-8675005 Caenorhabditis elegans
Exon61356   174   II: 8680279-8680452 Caenorhabditis elegans
Exon61370   608   II: 8680515-8681122 Caenorhabditis elegans
Exon61378   248   II: 8681420-8681667 Caenorhabditis elegans
Exon61386   159   II: 8681726-8681884 Caenorhabditis elegans
Exon61394   97   II: 8682029-8682125 Caenorhabditis elegans
Exon61402   488   II: 8682175-8682662 Caenorhabditis elegans
Exon61410   179   II: 8682978-8683156 Caenorhabditis elegans
Exon61419   86   II: 8683208-8683293 Caenorhabditis elegans
Exon61426   126   II: 8684275-8684400 Caenorhabditis elegans
Exon61432   78   II: 8684847-8684924 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:D2085.5b.1 8669137 8684924 -1

1 Sequence

Length
5539

1 Sequence Ontology Term

Identifier Name Description
transcript