Genomics
2 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:C34C6.9.1 | C34C6.9.1 |
513
 |
II: 8685923-8686579 |
| Transcript:C34C6.9.2 | C34C6.9.2 |
592
|
II: 8685968-8686613 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:C34C6.9 | C34C6.9 |
180
|
II: 8686346-8686419 |
13 Allele
| Public Name |
|---|
| gk963801 |
| gk963053 |
| gk962682 |
| gk963446 |
| gk964068 |
| WBVar00174111 |
| gk149356 |
| gk149358 |
| gk149357 |
| WBVar02002863 |
| gk477839 |
| WBVar01935117 |
| gk487419 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00194940 | 8685923 | 8686613 | 1 |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrII_8686614..8688170 | 1557 | II: 8686614-8688170 | Caenorhabditis elegans |
11 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly decreased expression in eat-2(ad1116) comparing to in N2 at 3-days post L4 adult hermaphrodite animals. | DESeq2(v1.14.1), fold change > 2, p-value < 0.05 | WBPaper00055354:eat-2(ad1116)_downregulated | |
| Transcripts that showed significantly increased expression in cfp-1(tm6369) comparing to in N2 at early embryo stage. | DESeq2, FDR < 0.05 | WBPaper00058691:cfp-1(tm6369)_upregulated | |
| Transcripts that showed significantly increased expression in sin-3(tm1276) comparing to in N2 at early embryo stage. | DESeq2, FDR < 0.05 | WBPaper00058691:sin-3(tm1276)_upregulated | |
| Transcripts that showed significantly decreased expression after animals were treated with 100uM Rapamycin from day 1 to day 3 adult hermaphradite. | DESeq2(v1.14.1), fold change > 2, p-value < 0.05 | WBPaper00055354:Rapamycin_downregulated | |
| Transcripts that showed significantly decreased expression after animals were treated with 50uM Rifampicin and 100uM Psora from day 1 to day 3 adult hermaphradite. | DESeq2(v1.14.1), fold change > 2, p-value < 0.05 | WBPaper00055354:Rifampicin-Psora_downregulated | |
| Transcripts that showed significantly increased expression in xpf-1(tm2842) comparing to in N2 animals. | DESeq2 1.14.1, fold change > 2, FDR < 0.01. | WBPaper00062497:xpf-1(tm2842)_upregulated | |
| Transcripts that showed significantly decreased expression after animals were treated with 100uM Rapamycin, 50uM Rifampicin and 100uM Psora from day 1 to day 3 adult hermaphradite. | DESeq2(v1.14.1), fold change > 2, p-value < 0.05 | WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated | |
| Transcripts that showed significantly decreased expression after animals were treated with 100uM Rapamycin, 100uM Psora and 250uM Allantoin from day 1 to day 3 adult hermaphradite. | DESeq2(v1.14.1), fold change > 2, p-value < 0.05 | WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated | |
| Transcripts that showed significantly increased expression in Day 8 adults comparing to in Day 1 adults in intestine cells. | t-test, fold change > 2, p-value < 0.01. | WBPaper00062590:Aging_upregulated_intestine | |
| Transcripts that showed significantly decreased expression in Day 8 adults comparing to in Day 1 adults in neuron cells. | t-test, fold change > 2, p-value < 0.01. | WBPaper00062590:Aging_downregulated_neuron | |
| Top 300 transcripts enriched in K cell, K' cell according to single cell RNAseq. | Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. | WBPaper00061340:K_Kprime |
3 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| Expr1145876 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015 | |||
| Expr2019612 | Single cell embryonic expression. Only cell types with an expression fraction of greater 0.2 of the maximum expressed fraction are labeled (Full data can be downloaded from http://caltech.wormbase.org/pub/wormbase/datasets-published/packer2019/). The colors represent the broad cell class to which the cell type has been assigned. The size of the point is proportional to the log2 of the numbers of cells in the dataset of that cell type. Interactive visualizations are available as a web app (https://cello.shinyapps.io/celegans/) and can also be installed as an R package (https://github.com/qinzhu/VisCello.celegans). | |||
| Expr2001389 | Single cell embryonic expression. Only cell types with an expression fraction of greater 0.2 of the maximum expressed fraction are labeled (Full data can be downloaded from http://caltech.wormbase.org/pub/wormbase/datasets-published/packer2019/). The colors represent the broad cell class to which the cell type has been assigned. The size of the point is proportional to the log2 of the numbers of cells in the dataset of that cell type. Interactive visualizations are available as a web app (https://cello.shinyapps.io/celegans/) and can also be installed as an R package (https://github.com/qinzhu/VisCello.celegans). |