WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K08F8.5a.1 Sequence Name  K08F8.5a.1
Length (nt)  1288   Chromosome Location  II: 8767185-8769422
Chromosome . Primary Identifier  II Chromosome Location . Start  8767185
Chromosome Location . End  8769422 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K08F8.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010682 nsph-1.1 K08F8.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K08F8.5a K08F8.5a 1158   II: 8767200-8767229

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K08F8.5a.1 8767185 8769422 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

9 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon61704   45   II: 8767185-8767229 Caenorhabditis elegans
Exon61705   159   II: 8767297-8767455 Caenorhabditis elegans
Exon61707   66   II: 8767639-8767704 Caenorhabditis elegans
Exon61708   270   II: 8767834-8768103 Caenorhabditis elegans
Exon61710   170   II: 8768146-8768315 Caenorhabditis elegans
Exon61713   135   II: 8768489-8768623 Caenorhabditis elegans
Exon61715   106   II: 8768673-8768778 Caenorhabditis elegans
Exon61717   91   II: 8768827-8768917 Caenorhabditis elegans
Exon61719   246   II: 8769177-8769422 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K08F8.5a.1 8767185 8769422 1

1 Sequence

Length
1288

1 Sequence Ontology Term

Identifier Name Description
transcript