WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F46C5.3.1 Sequence Name  F46C5.3.1
Length (nt)  1336   Chromosome Location  II: 8826069-8828215
Chromosome . Primary Identifier  II Chromosome Location . Start  8826069
Chromosome Location . End  8828215 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F46C5.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003544 nas-25 F46C5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F46C5.3 F46C5.3 1200   II: 8826110-8826154

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F46C5.3.1 8826069 8828215 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon61831   86   II: 8826069-8826154 Caenorhabditis elegans
Exon61832   63   II: 8826397-8826459 Caenorhabditis elegans
Exon61833   82   II: 8826584-8826665 Caenorhabditis elegans
Exon61834   90   II: 8826716-8826805 Caenorhabditis elegans
Exon61835   104   II: 8826973-8827076 Caenorhabditis elegans
Exon61836   105   II: 8827123-8827227 Caenorhabditis elegans
Exon61837   98   II: 8827271-8827368 Caenorhabditis elegans
Exon61838   244   II: 8827414-8827657 Caenorhabditis elegans
Exon61839   254   II: 8827706-8827959 Caenorhabditis elegans
Exon61840   210   II: 8828006-8828215 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F46C5.3.1 8826069 8828215 1

1 Sequence

Length
1336

1 Sequence Ontology Term

Identifier Name Description
transcript