WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T07D4.3a.1 Sequence Name  T07D4.3a.1
Length (nt)  4029   Chromosome Location  II: 8878496-8883659
Chromosome . Primary Identifier  II Chromosome Location . Start  8878496
Chromosome Location . End  8883659 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T07D4.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004355 rha-1 T07D4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T07D4.3a T07D4.3a 3906   II: 8878619-8878902

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T07D4.3a.1 8878496 8883659 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon61955   407   II: 8878496-8878902 Caenorhabditis elegans
Exon61957   33   II: 8879399-8879431 Caenorhabditis elegans
Exon61959   64   II: 8879481-8879544 Caenorhabditis elegans
Exon61961   217   II: 8879591-8879807 Caenorhabditis elegans
Exon61963   408   II: 8879858-8880265 Caenorhabditis elegans
Exon61965   675   II: 8880324-8880998 Caenorhabditis elegans
Exon61967   169   II: 8881044-8881212 Caenorhabditis elegans
Exon61969   345   II: 8881258-8881602 Caenorhabditis elegans
Exon61971   175   II: 8881652-8881826 Caenorhabditis elegans
Exon61973   489   II: 8881873-8882361 Caenorhabditis elegans
Exon61975   261   II: 8882410-8882670 Caenorhabditis elegans
Exon61977   137   II: 8882723-8882859 Caenorhabditis elegans
Exon61979   47   II: 8882911-8882957 Caenorhabditis elegans
Exon61981   431   II: 8883015-8883445 Caenorhabditis elegans
Exon61983   171   II: 8883489-8883659 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T07D4.3a.1 8878496 8883659 -1

1 Sequence

Length
4029

1 Sequence Ontology Term

Identifier Name Description
transcript