WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T07D4.4b.1 Sequence Name  T07D4.4b.1
Length (nt)  2294   Chromosome Location  II: 8884901-8889676
Chromosome . Primary Identifier  II Chromosome Location . Start  8884901
Chromosome Location . End  8889676 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T07D4.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011580 ddx-19 T07D4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T07D4.4b T07D4.4b 1917   II: 8884908-8884973

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T07D4.4b.1 8884901 8889676 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon61990   73   II: 8884901-8884973 Caenorhabditis elegans
Exon61992   52   II: 8885180-8885231 Caenorhabditis elegans
Exon61996   111   II: 8885278-8885388 Caenorhabditis elegans
Exon61999   75   II: 8885468-8885542 Caenorhabditis elegans
Exon62003   58   II: 8887037-8887094 Caenorhabditis elegans
Exon62007   59   II: 8887144-8887202 Caenorhabditis elegans
Exon62011   107   II: 8887254-8887360 Caenorhabditis elegans
Exon62016   287   II: 8887406-8887692 Caenorhabditis elegans
Exon62021   277   II: 8887846-8888122 Caenorhabditis elegans
Exon62026   125   II: 8888173-8888297 Caenorhabditis elegans
Exon62031   111   II: 8888347-8888457 Caenorhabditis elegans
Exon62036   79   II: 8888621-8888699 Caenorhabditis elegans
Exon62041   445   II: 8888753-8889197 Caenorhabditis elegans
Exon62047   435   II: 8889242-8889676 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T07D4.4b.1 8884901 8889676 1

1 Sequence

Length
2294

1 Sequence Ontology Term

Identifier Name Description
transcript