WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C06C3.8c.1 Sequence Name  C06C3.8c.1
Length (nt)  1893   Chromosome Location  II: 9386588-9392824
Chromosome . Primary Identifier  II Chromosome Location . Start  9386588
Chromosome Location . End  9392824 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C06C3.8c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007378 lido-17 C06C3.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C06C3.8c C06C3.8c 1893   II: 9386588-9386770

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C06C3.8c.1 9386588 9392824 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon63544   183   II: 9386588-9386770 Caenorhabditis elegans
Exon63547   130   II: 9386816-9386945 Caenorhabditis elegans
Exon63551   328   II: 9387049-9387376 Caenorhabditis elegans
Exon63556   305   II: 9387945-9388249 Caenorhabditis elegans
Exon63559   62   II: 9388296-9388357 Caenorhabditis elegans
Exon63562   99   II: 9388755-9388853 Caenorhabditis elegans
Exon63565   99   II: 9389095-9389193 Caenorhabditis elegans
Exon63568   126   II: 9389268-9389393 Caenorhabditis elegans
Exon63571   159   II: 9390005-9390163 Caenorhabditis elegans
Exon63575   308   II: 9390652-9390959 Caenorhabditis elegans
Exon63576   73   II: 9392661-9392733 Caenorhabditis elegans
Exon63577   21   II: 9392804-9392824 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C06C3.8c.1 9386588 9392824 -1

1 Sequence

Length
1893

1 Sequence Ontology Term

Identifier Name Description
transcript