WormMine: Gene WBGene00197031

• WormBase Gene ID: WBGene00197031
• Gene Name: F35H8.9
• Sequence Name: F35H8.9
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by mrps-5 based on RNA-seq studies. Is affected by Oligosaccharides based on microarray studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 67

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00197031

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F35H8.9	F35H8.9	67	II: 9572276-9572342

Other

0 CDSs

0 RNAi Result

7 Allele

• gk963801
• gk963053
• gk962682
• gk962798
• WBVar01604492
• gk710373
• gk633800

1 Chromosome

• WormBase ID: II
• Organism: Caenorhabditis elegans
• Length (nt): 15279421

1 Chromosome Location

• Feature . Primary Identifier: WBGene00197031
• Start: 9572276
• End: 9572342
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrII_9572343..9575969
• Length (nt): 3627
• Chromosome Location: II: 9572343-9575969
• Organism: Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression after four-day-old young adult worms were placed on NGM plates seeded with OP50 in the presence 5% Agaro-oligosaccharides(AGO) for 24 h, comparing to animals grown in the absence of AGO.	Fold change > 2.	WBPaper00064306:Agaro-oligosaccharides_upregulated
	Transcripts that showed significantly decreased expression in mrps-5(RNAi) animals comparing to animals injected with empty vector.	Differential expression was assessed using a Partial least-squares discriminant analysis (PLS-DA) using mixomics setting a variable of importance (VIP) score of greater than 1 as significant.	WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
Microgravity simulation using a desktop RPM from hatching to L4 larva.	Genes that showed significantly increased expression by microgravity simulation using a desktop RPM, from hatching to L4 larva stage.	Transcriptome Analysis Console version 3.0 software (Affymetrix, CA, USA) for differential gene expression analysis. Selection of differentially expressed genes was basd on filter criteria which were defined as one-way ANOVA p-value of < 0.05 with fold changes of <2 and >2.	WBPaper00053420:Microgravity-Simulated_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00197031
• Start: 9572276
• End: 9572342
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 67

1 Sequence Ontology Term