WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK1321.2a.1 Sequence Name  ZK1321.2a.1
Length (nt)  1764   Chromosome Location  II: 9758234-9768285
Chromosome . Primary Identifier  II Chromosome Location . Start  9758234
Chromosome Location . End  9768285 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK1321.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00014261 shk-1 ZK1321.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK1321.2a ZK1321.2a 1446   II: 9758254-9758378

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZK1321.2a.1 9758234 9768285 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon64418   145   II: 9758234-9758378 Caenorhabditis elegans
Exon64425   120   II: 9765426-9765545 Caenorhabditis elegans
Exon64431   84   II: 9765687-9765770 Caenorhabditis elegans
Exon64437   93   II: 9765815-9765907 Caenorhabditis elegans
Exon64445   100   II: 9766352-9766451 Caenorhabditis elegans
Exon64451   173   II: 9766607-9766779 Caenorhabditis elegans
Exon64457   158   II: 9766830-9766987 Caenorhabditis elegans
Exon64463   109   II: 9767032-9767140 Caenorhabditis elegans
Exon64469   93   II: 9767187-9767279 Caenorhabditis elegans
Exon64475   181   II: 9767328-9767508 Caenorhabditis elegans
Exon64481   20   II: 9767594-9767613 Caenorhabditis elegans
Exon64487   100   II: 9767724-9767823 Caenorhabditis elegans
Exon64498   388   II: 9767898-9768285 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZK1321.2a.1 9758234 9768285 1

1 Sequence

Length
1764

1 Sequence Ontology Term

Identifier Name Description
transcript