WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C08H9.3a.1 Sequence Name  C08H9.3a.1
Length (nt)  2423   Chromosome Location  II: 9882730-9886442
Chromosome . Primary Identifier  II Chromosome Location . Start  9882730
Chromosome Location . End  9886442 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C08H9.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007464 algn-8 C08H9.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C08H9.3a C08H9.3a 2301   II: 9882848-9883015

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C08H9.3a.1 9882730 9886442 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon64757   286   II: 9882730-9883015 Caenorhabditis elegans
Exon64758   93   II: 9883064-9883156 Caenorhabditis elegans
Exon64759   630   II: 9883205-9883834 Caenorhabditis elegans
Exon64760   103   II: 9884049-9884151 Caenorhabditis elegans
Exon64761   143   II: 9884201-9884343 Caenorhabditis elegans
Exon64762   122   II: 9884480-9884601 Caenorhabditis elegans
Exon64763   106   II: 9884651-9884756 Caenorhabditis elegans
Exon64764   254   II: 9884802-9885055 Caenorhabditis elegans
Exon64765   133   II: 9885106-9885238 Caenorhabditis elegans
Exon64767   216   II: 9885309-9885524 Caenorhabditis elegans
Exon64769   97   II: 9886021-9886117 Caenorhabditis elegans
Exon64771   143   II: 9886161-9886303 Caenorhabditis elegans
Exon64773   97   II: 9886346-9886442 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C08H9.3a.1 9882730 9886442 -1

1 Sequence

Length
2423

1 Sequence Ontology Term

Identifier Name Description
transcript