WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R53.3a.1 Sequence Name  R53.3a.1
Length (nt)  2475   Chromosome Location  II: 9955185-9962995
Chromosome . Primary Identifier  II Chromosome Location . Start  9955185
Chromosome Location . End  9962995 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R53.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001207 egl-43 R53.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R53.3a R53.3a 1632   II: 9955186-9955305

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R53.3a.1 9955185 9962995 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon65115   121   II: 9955185-9955305 Caenorhabditis elegans
Exon65118   102   II: 9957013-9957114 Caenorhabditis elegans
Exon65120   131   II: 9957170-9957300 Caenorhabditis elegans
Exon65123   162   II: 9958588-9958749 Caenorhabditis elegans
Exon65126   115   II: 9959750-9959864 Caenorhabditis elegans
Exon65130   186   II: 9960300-9960485 Caenorhabditis elegans
Exon65133   98   II: 9960939-9961036 Caenorhabditis elegans
Exon65137   505   II: 9961187-9961691 Caenorhabditis elegans
Exon65141   72   II: 9961829-9961900 Caenorhabditis elegans
Exon65146   983   II: 9962013-9962995 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R53.3a.1 9955185 9962995 1

1 Sequence

Length
2475

1 Sequence Ontology Term

Identifier Name Description
transcript