WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54B3.1a.1 Sequence Name  F54B3.1a.1
Length (nt)  11048   Chromosome Location  II: 10251266-10268207
Chromosome . Primary Identifier  II Chromosome Location . Start  10251266
Chromosome Location . End  10268207 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54B3.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010013 F54B3.1 F54B3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54B3.1a F54B3.1a 10698   II: 10251294-10251352

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54B3.1a.1 10251266 10268207 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon65742   87   II: 10251266-10251352 Caenorhabditis elegans
Exon65743   292   II: 10251517-10251808 Caenorhabditis elegans
Exon65745   171   II: 10251993-10252163 Caenorhabditis elegans
Exon65747   478   II: 10252210-10252687 Caenorhabditis elegans
Exon65749   540   II: 10253276-10253815 Caenorhabditis elegans
Exon65751   385   II: 10254203-10254587 Caenorhabditis elegans
Exon65753   561   II: 10255155-10255715 Caenorhabditis elegans
Exon65755   574   II: 10256268-10256841 Caenorhabditis elegans
Exon65757   2951   II: 10257101-10260051 Caenorhabditis elegans
Exon65759   135   II: 10260720-10260854 Caenorhabditis elegans
Exon65761   1285   II: 10260904-10262188 Caenorhabditis elegans
Exon65763   143   II: 10262882-10263024 Caenorhabditis elegans
Exon65765   503   II: 10263079-10263581 Caenorhabditis elegans
Exon65767   1268   II: 10264053-10265320 Caenorhabditis elegans
Exon65769   197   II: 10265483-10265679 Caenorhabditis elegans
Exon65771   451   II: 10265736-10266186 Caenorhabditis elegans
Exon65773   193   II: 10266647-10266839 Caenorhabditis elegans
Exon65775   86   II: 10266887-10266972 Caenorhabditis elegans
Exon65777   87   II: 10267025-10267111 Caenorhabditis elegans
Exon65779   661   II: 10267547-10268207 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54B3.1a.1 10251266 10268207 1

1 Sequence

Length
11048

1 Sequence Ontology Term

Identifier Name Description
transcript