WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:R166.5b Sequence Name  R166.5b
Length (nt)  2124   Chromosome Location  II: 10544357-10544401
Chromosome . Primary Identifier  II Chromosome Location . Start  10544357
Chromosome Location . End  10544401
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R166.5b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE40868 MNK-1, isoform b 78.9 707 Caenorhabditis elegans
 

Other

5 RNAi

WormBase ID
WBRNAi00052001
WBRNAi00022430
WBRNAi00098176
WBRNAi00034950
WBRNAi00087960

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:R166.5b 10544357 10544401 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011304 mnk-1 R166.5 Caenorhabditis elegans

7 Locations


Feature . Primary Identifier
Start End Strand
CDS:R166.5b 10544357 10544401 -1
CDS:R166.5b 10544455 10544857 -1
CDS:R166.5b 10544908 10545141 -1
CDS:R166.5b 10545436 10545591 -1
CDS:R166.5b 10545638 10546325 -1
CDS:R166.5b 10547192 10547662 -1
CDS:R166.5b 10553496 10553622 -1

1 Sequence

Length
2124

1 Sequence Ontology Term

Identifier Name Description
CDS  

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:R166.5b.2 R166.5b.2 4319   II: 10542421-10554183
Transcript:R166.5b.3 R166.5b.3 4140   II: 10542421-10553702
Transcript:R166.5b.1 R166.5b.1 4216   II: 10542429-10555044