WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09G5.8a.1 Sequence Name  C09G5.8a.1
Length (nt)  4096   Chromosome Location  II: 10720231-10729329
Chromosome . Primary Identifier  II Chromosome Location . Start  10720231
Chromosome Location . End  10729329 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09G5.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007490 mks-5 C09G5.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09G5.8a C09G5.8a 3969   II: 10720279-10720280

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09G5.8a.1 10720231 10729329 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon66741   50   II: 10720231-10720280 Caenorhabditis elegans
Exon66742   126   II: 10720457-10720582 Caenorhabditis elegans
Exon66743   300   II: 10720950-10721249 Caenorhabditis elegans
Exon66744   133   II: 10721329-10721461 Caenorhabditis elegans
Exon66745   368   II: 10721516-10721883 Caenorhabditis elegans
Exon66747   261   II: 10722197-10722457 Caenorhabditis elegans
Exon66750   295   II: 10723826-10724120 Caenorhabditis elegans
Exon66752   171   II: 10724172-10724342 Caenorhabditis elegans
Exon66754   219   II: 10724580-10724798 Caenorhabditis elegans
Exon66756   219   II: 10724981-10725199 Caenorhabditis elegans
Exon66758   270   II: 10726493-10726762 Caenorhabditis elegans
Exon66760   450   II: 10726916-10727365 Caenorhabditis elegans
Exon66762   104   II: 10727413-10727516 Caenorhabditis elegans
Exon66764   470   II: 10727563-10728032 Caenorhabditis elegans
Exon66766   327   II: 10728198-10728524 Caenorhabditis elegans
Exon66768   171   II: 10728946-10729116 Caenorhabditis elegans
Exon66773   162   II: 10729168-10729329 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09G5.8a.1 10720231 10729329 1

1 Sequence

Length
4096

1 Sequence Ontology Term

Identifier Name Description
transcript