WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C52A11.4a.1 Sequence Name  C52A11.4a.1
Length (nt)  7856   Chromosome Location  II: 10738635-10772847
Chromosome . Primary Identifier  II Chromosome Location . Start  10738635
Chromosome Location . End  10772847 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C52A11.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003404 mpz-1 C52A11.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C52A11.4a C52A11.4a 7182   II: 10739275-10739358

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C52A11.4a.1 10738635 10772847 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

42 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon66785   724   II: 10738635-10739358 Caenorhabditis elegans
Exon66793   147   II: 10739660-10739806 Caenorhabditis elegans
Exon66802   141   II: 10739853-10739993 Caenorhabditis elegans
Exon66811   309   II: 10740130-10740438 Caenorhabditis elegans
Exon66822   84   II: 10741137-10741220 Caenorhabditis elegans
Exon66829   599   II: 10741497-10742095 Caenorhabditis elegans
Exon66839   67   II: 10742488-10742554 Caenorhabditis elegans
Exon66847   93   II: 10746348-10746440 Caenorhabditis elegans
Exon66855   202   II: 10746694-10746895 Caenorhabditis elegans
Exon66863   926   II: 10747055-10747980 Caenorhabditis elegans
Exon66871   234   II: 10748244-10748477 Caenorhabditis elegans
Exon66880   570   II: 10748528-10749097 Caenorhabditis elegans
Exon66887   75   II: 10749856-10749930 Caenorhabditis elegans
Exon66894   120   II: 10751054-10751173 Caenorhabditis elegans
Exon66901   127   II: 10751222-10751348 Caenorhabditis elegans
Exon66908   99   II: 10751463-10751561 Caenorhabditis elegans
Exon66915   107   II: 10751725-10751831 Caenorhabditis elegans
Exon66922   181   II: 10752126-10752306 Caenorhabditis elegans
Exon66930   77   II: 10752356-10752432 Caenorhabditis elegans
Exon66936   57   II: 10753531-10753587 Caenorhabditis elegans
Exon66942   75   II: 10754011-10754085 Caenorhabditis elegans
Exon66948   87   II: 10754430-10754516 Caenorhabditis elegans
Exon66954   85   II: 10756732-10756816 Caenorhabditis elegans
Exon66960   134   II: 10757050-10757183 Caenorhabditis elegans
Exon66967   286   II: 10757494-10757779 Caenorhabditis elegans
Exon66973   521   II: 10757953-10758473 Caenorhabditis elegans
Exon66980   92   II: 10758889-10758980 Caenorhabditis elegans
Exon66988   124   II: 10759359-10759482 Caenorhabditis elegans
Exon66995   146   II: 10759604-10759749 Caenorhabditis elegans
Exon67002   152   II: 10759793-10759944 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C52A11.4a.1 10738635 10772847 -1

1 Sequence

Length
7856

1 Sequence Ontology Term

Identifier Name Description
transcript