WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C52A11.4a.1 Sequence Name  C52A11.4a.1
Length (nt)  7856   Chromosome Location  II: 10738635-10772847
Chromosome . Primary Identifier  II Chromosome Location . Start  10738635
Chromosome Location . End  10772847 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C52A11.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003404 mpz-1 C52A11.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C52A11.4a C52A11.4a 7182   II: 10739275-10739358

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C52A11.4a.1 10738635 10772847 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

42 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon66791   724   II: 10738635-10739358 Caenorhabditis elegans
Exon66800   147   II: 10739660-10739806 Caenorhabditis elegans
Exon66809   141   II: 10739853-10739993 Caenorhabditis elegans
Exon66818   309   II: 10740130-10740438 Caenorhabditis elegans
Exon66829   84   II: 10741137-10741220 Caenorhabditis elegans
Exon66836   599   II: 10741497-10742095 Caenorhabditis elegans
Exon66846   67   II: 10742488-10742554 Caenorhabditis elegans
Exon66854   93   II: 10746348-10746440 Caenorhabditis elegans
Exon66862   202   II: 10746694-10746895 Caenorhabditis elegans
Exon66870   926   II: 10747055-10747980 Caenorhabditis elegans
Exon66878   234   II: 10748244-10748477 Caenorhabditis elegans
Exon66887   570   II: 10748528-10749097 Caenorhabditis elegans
Exon66894   75   II: 10749856-10749930 Caenorhabditis elegans
Exon66901   120   II: 10751054-10751173 Caenorhabditis elegans
Exon66908   127   II: 10751222-10751348 Caenorhabditis elegans
Exon66915   99   II: 10751463-10751561 Caenorhabditis elegans
Exon66922   107   II: 10751725-10751831 Caenorhabditis elegans
Exon66929   181   II: 10752126-10752306 Caenorhabditis elegans
Exon66937   77   II: 10752356-10752432 Caenorhabditis elegans
Exon66943   57   II: 10753531-10753587 Caenorhabditis elegans
Exon66949   75   II: 10754011-10754085 Caenorhabditis elegans
Exon66955   87   II: 10754430-10754516 Caenorhabditis elegans
Exon66961   85   II: 10756732-10756816 Caenorhabditis elegans
Exon66967   134   II: 10757050-10757183 Caenorhabditis elegans
Exon66974   286   II: 10757494-10757779 Caenorhabditis elegans
Exon66980   521   II: 10757953-10758473 Caenorhabditis elegans
Exon66987   92   II: 10758889-10758980 Caenorhabditis elegans
Exon66995   124   II: 10759359-10759482 Caenorhabditis elegans
Exon67002   146   II: 10759604-10759749 Caenorhabditis elegans
Exon67009   152   II: 10759793-10759944 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C52A11.4a.1 10738635 10772847 -1

1 Sequence

Length
7856

1 Sequence Ontology Term

Identifier Name Description
transcript