WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C52A11.4i.1 Sequence Name  C52A11.4i.1
Length (nt)  2943   Chromosome Location  II: 10739275-10748584
Chromosome . Primary Identifier  II Chromosome Location . Start  10739275
Chromosome Location . End  10748584 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C52A11.4i.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003404 mpz-1 C52A11.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C52A11.4i C52A11.4i 2943   II: 10739275-10739358

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C52A11.4i.1 10739275 10748584 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon66787   84   II: 10739275-10739358 Caenorhabditis elegans
Exon66800   147   II: 10739660-10739806 Caenorhabditis elegans
Exon66809   141   II: 10739853-10739993 Caenorhabditis elegans
Exon66818   309   II: 10740130-10740438 Caenorhabditis elegans
Exon66827   84   II: 10741137-10741220 Caenorhabditis elegans
Exon66836   599   II: 10741497-10742095 Caenorhabditis elegans
Exon66846   67   II: 10742488-10742554 Caenorhabditis elegans
Exon66854   93   II: 10746348-10746440 Caenorhabditis elegans
Exon66862   202   II: 10746694-10746895 Caenorhabditis elegans
Exon66870   926   II: 10747055-10747980 Caenorhabditis elegans
Exon66878   234   II: 10748244-10748477 Caenorhabditis elegans
Exon66879   57   II: 10748528-10748584 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C52A11.4i.1 10739275 10748584 -1

1 Sequence

Length
2943

1 Sequence Ontology Term

Identifier Name Description
transcript