WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C52A11.4g.1 Sequence Name  C52A11.4g.1
Length (nt)  7050   Chromosome Location  II: 10739275-10771962
Chromosome . Primary Identifier  II Chromosome Location . Start  10739275
Chromosome Location . End  10771962 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C52A11.4g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003404 mpz-1 C52A11.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C52A11.4g C52A11.4g 6567   II: 10739275-10739358

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C52A11.4g.1 10739275 10771962 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

40 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon66791   84   II: 10739275-10739358 Caenorhabditis elegans
Exon66798   147   II: 10739660-10739806 Caenorhabditis elegans
Exon66807   141   II: 10739853-10739993 Caenorhabditis elegans
Exon66816   309   II: 10740130-10740438 Caenorhabditis elegans
Exon66821   96   II: 10741125-10741220 Caenorhabditis elegans
Exon66834   599   II: 10741497-10742095 Caenorhabditis elegans
Exon66844   67   II: 10742488-10742554 Caenorhabditis elegans
Exon66852   93   II: 10746348-10746440 Caenorhabditis elegans
Exon66860   202   II: 10746694-10746895 Caenorhabditis elegans
Exon66868   926   II: 10747055-10747980 Caenorhabditis elegans
Exon66876   234   II: 10748244-10748477 Caenorhabditis elegans
Exon66885   570   II: 10748528-10749097 Caenorhabditis elegans
Exon66892   75   II: 10749856-10749930 Caenorhabditis elegans
Exon66899   120   II: 10751054-10751173 Caenorhabditis elegans
Exon66906   127   II: 10751222-10751348 Caenorhabditis elegans
Exon66913   99   II: 10751463-10751561 Caenorhabditis elegans
Exon66920   107   II: 10751725-10751831 Caenorhabditis elegans
Exon66927   181   II: 10752126-10752306 Caenorhabditis elegans
Exon66935   77   II: 10752356-10752432 Caenorhabditis elegans
Exon66941   57   II: 10753531-10753587 Caenorhabditis elegans
Exon66947   75   II: 10754011-10754085 Caenorhabditis elegans
Exon66953   87   II: 10754430-10754516 Caenorhabditis elegans
Exon66959   85   II: 10756732-10756816 Caenorhabditis elegans
Exon66965   134   II: 10757050-10757183 Caenorhabditis elegans
Exon66972   286   II: 10757494-10757779 Caenorhabditis elegans
Exon66979   521   II: 10757953-10758473 Caenorhabditis elegans
Exon66986   92   II: 10758889-10758980 Caenorhabditis elegans
Exon66994   124   II: 10759359-10759482 Caenorhabditis elegans
Exon67001   146   II: 10759604-10759749 Caenorhabditis elegans
Exon67008   152   II: 10759793-10759944 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C52A11.4g.1 10739275 10771962 -1

1 Sequence

Length
7050

1 Sequence Ontology Term

Identifier Name Description
transcript