WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D8.1k.1 Sequence Name  C09D8.1k.1
Length (nt)  6213   Chromosome Location  II: 10975539-11011782
Chromosome . Primary Identifier  II Chromosome Location . Start  10975539
Chromosome Location . End  11011782 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D8.1k.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004215 ptp-3 C09D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D8.1k C09D8.1k 6213   II: 10975539-10975674

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1k.1 10975539 11011782 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

28 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon67478   136   II: 10975539-10975674 Caenorhabditis elegans
Exon67488   142   II: 10976186-10976327 Caenorhabditis elegans
Exon67494   241   II: 10976373-10976613 Caenorhabditis elegans
Exon67500   214   II: 10977017-10977230 Caenorhabditis elegans
Exon67514   135   II: 10983267-10983401 Caenorhabditis elegans
Exon67524   141   II: 10983794-10983934 Caenorhabditis elegans
Exon67534   124   II: 10983998-10984121 Caenorhabditis elegans
Exon67549   85   II: 10984385-10984469 Caenorhabditis elegans
Exon67559   246   II: 10984517-10984762 Caenorhabditis elegans
Exon67569   142   II: 10985022-10985163 Caenorhabditis elegans
Exon67579   208   II: 10985213-10985420 Caenorhabditis elegans
Exon67589   71   II: 10985485-10985555 Caenorhabditis elegans
Exon67599   30   II: 10986071-10986100 Caenorhabditis elegans
Exon67620   50   II: 10993895-10993944 Caenorhabditis elegans
Exon67631   265   II: 10994145-10994409 Caenorhabditis elegans
Exon67642   213   II: 10995024-10995236 Caenorhabditis elegans
Exon67653   143   II: 10995310-10995452 Caenorhabditis elegans
Exon67664   111   II: 10996164-10996274 Caenorhabditis elegans
Exon67676   133   II: 10998998-10999130 Caenorhabditis elegans
Exon67692   86   II: 11006751-11006836 Caenorhabditis elegans
Exon67705   177   II: 11007016-11007192 Caenorhabditis elegans
Exon67720   516   II: 11007310-11007825 Caenorhabditis elegans
Exon67734   276   II: 11007889-11008164 Caenorhabditis elegans
Exon67748   99   II: 11009181-11009279 Caenorhabditis elegans
Exon67762   1619   II: 11009368-11010986 Caenorhabditis elegans
Exon67776   253   II: 11011040-11011292 Caenorhabditis elegans
Exon67790   246   II: 11011373-11011618 Caenorhabditis elegans
Exon67799   111   II: 11011672-11011782 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1k.1 10975539 11011782 1

1 Sequence

Length
6213

1 Sequence Ontology Term

Identifier Name Description
transcript