WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D8.1n.1 Sequence Name  C09D8.1n.1
Length (nt)  5628   Chromosome Location  II: 10983070-11011782
Chromosome . Primary Identifier  II Chromosome Location . Start  10983070
Chromosome Location . End  11011782 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D8.1n.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004215 ptp-3 C09D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D8.1n C09D8.1n 5628   II: 10983070-10983217

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1n.1 10983070 11011782 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

25 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon67507   148   II: 10983070-10983217 Caenorhabditis elegans
Exon67517   135   II: 10983267-10983401 Caenorhabditis elegans
Exon67527   141   II: 10983794-10983934 Caenorhabditis elegans
Exon67537   124   II: 10983998-10984121 Caenorhabditis elegans
Exon67552   85   II: 10984385-10984469 Caenorhabditis elegans
Exon67562   246   II: 10984517-10984762 Caenorhabditis elegans
Exon67572   142   II: 10985022-10985163 Caenorhabditis elegans
Exon67582   208   II: 10985213-10985420 Caenorhabditis elegans
Exon67592   71   II: 10985485-10985555 Caenorhabditis elegans
Exon67602   30   II: 10986071-10986100 Caenorhabditis elegans
Exon67623   50   II: 10993895-10993944 Caenorhabditis elegans
Exon67634   265   II: 10994145-10994409 Caenorhabditis elegans
Exon67645   213   II: 10995024-10995236 Caenorhabditis elegans
Exon67656   143   II: 10995310-10995452 Caenorhabditis elegans
Exon67667   111   II: 10996164-10996274 Caenorhabditis elegans
Exon67679   133   II: 10998998-10999130 Caenorhabditis elegans
Exon67695   86   II: 11006751-11006836 Caenorhabditis elegans
Exon67708   177   II: 11007016-11007192 Caenorhabditis elegans
Exon67723   516   II: 11007310-11007825 Caenorhabditis elegans
Exon67737   276   II: 11007889-11008164 Caenorhabditis elegans
Exon67751   99   II: 11009181-11009279 Caenorhabditis elegans
Exon67765   1619   II: 11009368-11010986 Caenorhabditis elegans
Exon67779   253   II: 11011040-11011292 Caenorhabditis elegans
Exon67793   246   II: 11011373-11011618 Caenorhabditis elegans
Exon67800   111   II: 11011672-11011782 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1n.1 10983070 11011782 1

1 Sequence

Length
5628

1 Sequence Ontology Term

Identifier Name Description
transcript