WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C09D8.1b.1 Sequence Name  C09D8.1b.1
Length (nt)  4959   Chromosome Location  II: 10993507-11012247
Chromosome . Primary Identifier  II Chromosome Location . Start  10993507
Chromosome Location . End  11012247 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C09D8.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004215 ptp-3 C09D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C09D8.1b C09D8.1b 4404   II: 10993597-10993702

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1b.1 10993507 11012247 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon67611   196   II: 10993507-10993702 Caenorhabditis elegans
Exon67614   50   II: 10993895-10993944 Caenorhabditis elegans
Exon67625   265   II: 10994145-10994409 Caenorhabditis elegans
Exon67636   213   II: 10995024-10995236 Caenorhabditis elegans
Exon67647   143   II: 10995310-10995452 Caenorhabditis elegans
Exon67658   111   II: 10996164-10996274 Caenorhabditis elegans
Exon67670   133   II: 10998998-10999130 Caenorhabditis elegans
Exon67684   86   II: 11006751-11006836 Caenorhabditis elegans
Exon67697   177   II: 11007016-11007192 Caenorhabditis elegans
Exon67711   516   II: 11007310-11007825 Caenorhabditis elegans
Exon67725   276   II: 11007889-11008164 Caenorhabditis elegans
Exon67739   99   II: 11009181-11009279 Caenorhabditis elegans
Exon67753   1619   II: 11009368-11010986 Caenorhabditis elegans
Exon67767   253   II: 11011040-11011292 Caenorhabditis elegans
Exon67781   246   II: 11011373-11011618 Caenorhabditis elegans
Exon67807   576   II: 11011672-11012247 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C09D8.1b.1 10993507 11012247 1

1 Sequence

Length
4959

1 Sequence Ontology Term

Identifier Name Description
transcript