WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W10C6.1.1 Sequence Name  W10C6.1.1
Length (nt)  5602   Chromosome Location  II: 11108161-11120805
Chromosome . Primary Identifier  II Chromosome Location . Start  11108161
Chromosome Location . End  11120805 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W10C6.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003133 apc-1 W10C6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W10C6.1 W10C6.1 5448   II: 11108224-11108277

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W10C6.1.1 11108161 11120805 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon68118   117   II: 11108161-11108277 Caenorhabditis elegans
Exon68119   330   II: 11108331-11108660 Caenorhabditis elegans
Exon68120   430   II: 11108705-11109134 Caenorhabditis elegans
Exon68121   147   II: 11109420-11109566 Caenorhabditis elegans
Exon68130   88   II: 11112750-11112837 Caenorhabditis elegans
Exon68131   592   II: 11113321-11113912 Caenorhabditis elegans
Exon68132   464   II: 11114511-11114974 Caenorhabditis elegans
Exon68133   828   II: 11115569-11116396 Caenorhabditis elegans
Exon68134   856   II: 11117108-11117963 Caenorhabditis elegans
Exon68136   603   II: 11118372-11118974 Caenorhabditis elegans
Exon68137   132   II: 11119025-11119156 Caenorhabditis elegans
Exon68138   245   II: 11119641-11119885 Caenorhabditis elegans
Exon68139   118   II: 11119937-11120054 Caenorhabditis elegans
Exon68140   488   II: 11120106-11120593 Caenorhabditis elegans
Exon68141   164   II: 11120642-11120805 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W10C6.1.1 11108161 11120805 1

1 Sequence

Length
5602

1 Sequence Ontology Term

Identifier Name Description
transcript