WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T06D8.1a.1 Sequence Name  T06D8.1a.1
Length (nt)  11159   Chromosome Location  II: 11203221-11220642
Chromosome . Primary Identifier  II Chromosome Location . Start  11203221
Chromosome Location . End  11220642 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T06D8.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011522 srap-1 T06D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T06D8.1a T06D8.1a 10599   II: 11203822-11203948

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T06D8.1a.1 11203221 11220642 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

25 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon68357   106   II: 11203221-11203326 Caenorhabditis elegans
Exon68358   177   II: 11203772-11203948 Caenorhabditis elegans
Exon68372   201   II: 11206666-11206866 Caenorhabditis elegans
Exon68384   90   II: 11207002-11207091 Caenorhabditis elegans
Exon68396   123   II: 11207472-11207594 Caenorhabditis elegans
Exon68408   72   II: 11207650-11207721 Caenorhabditis elegans
Exon68428   102   II: 11208446-11208547 Caenorhabditis elegans
Exon68432   79   II: 11208730-11208808 Caenorhabditis elegans
Exon68440   173   II: 11208872-11209044 Caenorhabditis elegans
Exon68448   237   II: 11209127-11209363 Caenorhabditis elegans
Exon68460   119   II: 11209462-11209580 Caenorhabditis elegans
Exon68472   142   II: 11209647-11209788 Caenorhabditis elegans
Exon68484   525   II: 11209842-11210366 Caenorhabditis elegans
Exon68496   489   II: 11210415-11210903 Caenorhabditis elegans
Exon68514   1062   II: 11210951-11212012 Caenorhabditis elegans
Exon68520   5741   II: 11212146-11217886 Caenorhabditis elegans
Exon68532   123   II: 11217935-11218057 Caenorhabditis elegans
Exon68544   114   II: 11218100-11218213 Caenorhabditis elegans
Exon68556   103   II: 11218265-11218367 Caenorhabditis elegans
Exon68568   45   II: 11218450-11218494 Caenorhabditis elegans
Exon68574   288   II: 11218627-11218914 Caenorhabditis elegans
Exon68580   84   II: 11219458-11219541 Caenorhabditis elegans
Exon68592   131   II: 11219589-11219719 Caenorhabditis elegans
Exon68604   163   II: 11219762-11219924 Caenorhabditis elegans
Exon68626   670   II: 11219973-11220642 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T06D8.1a.1 11203221 11220642 1

1 Sequence

Length
11159

1 Sequence Ontology Term

Identifier Name Description
transcript