WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T06D8.1b.1 Sequence Name  T06D8.1b.1
Length (nt)  10439   Chromosome Location  II: 11203822-11220642
Chromosome . Primary Identifier  II Chromosome Location . Start  11203822
Chromosome Location . End  11220642 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T06D8.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011522 srap-1 T06D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T06D8.1b T06D8.1b 10035   II: 11203822-11203948

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T06D8.1b.1 11203822 11220642 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon68369   127   II: 11203822-11203948 Caenorhabditis elegans
Exon68373   201   II: 11206666-11206866 Caenorhabditis elegans
Exon68385   90   II: 11207002-11207091 Caenorhabditis elegans
Exon68397   123   II: 11207472-11207594 Caenorhabditis elegans
Exon68409   72   II: 11207650-11207721 Caenorhabditis elegans
Exon68429   102   II: 11208446-11208547 Caenorhabditis elegans
Exon68433   79   II: 11208730-11208808 Caenorhabditis elegans
Exon68441   173   II: 11208872-11209044 Caenorhabditis elegans
Exon68449   237   II: 11209127-11209363 Caenorhabditis elegans
Exon68461   119   II: 11209462-11209580 Caenorhabditis elegans
Exon68473   142   II: 11209647-11209788 Caenorhabditis elegans
Exon68485   525   II: 11209842-11210366 Caenorhabditis elegans
Exon68497   489   II: 11210415-11210903 Caenorhabditis elegans
Exon68508   831   II: 11210951-11211781 Caenorhabditis elegans
Exon68521   5741   II: 11212146-11217886 Caenorhabditis elegans
Exon68533   123   II: 11217935-11218057 Caenorhabditis elegans
Exon68545   114   II: 11218100-11218213 Caenorhabditis elegans
Exon68557   103   II: 11218265-11218367 Caenorhabditis elegans
Exon68581   84   II: 11219458-11219541 Caenorhabditis elegans
Exon68593   131   II: 11219589-11219719 Caenorhabditis elegans
Exon68605   163   II: 11219762-11219924 Caenorhabditis elegans
Exon68627   670   II: 11219973-11220642 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T06D8.1b.1 11203822 11220642 1

1 Sequence

Length
10439

1 Sequence Ontology Term

Identifier Name Description
transcript