WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00200946 Gene Name  T05B9.3
Sequence Name  ? T05B9.3 Organism  Caenorhabditis elegans
Automated Description  Enriched in AVK based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 288
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00200946

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T05B9.3 T05B9.3 288   II: 11255572-11255859
 

Other

0 CDSs

0 RNAi Result

8 Allele

Public Name
gk963801
gk963053
gk962684
gk963753
gk963752
gk817362
gk362692
gk455287

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00200946 11255572 11255859 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_11247515..11255571   8057 II: 11247515-11255571 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts significantly enriched in AVK neurons comparing to all cell types at L1 larva stage. edgeR, FDR < 0.001, fold change > 2. WBPaper00055565:AVK_enriched

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00200946 11255572 11255859 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
288

1 Sequence Ontology Term