WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00201624 Gene Name  C47G2.19
Sequence Name  ? C47G2.19 Organism  Caenorhabditis elegans
Automated Description  Is affected by daf-2 based on microarray studies. Biotype  SO:0001263
Genetic Position  Length (nt)  ? 260
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00201624

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C47G2.19 C47G2.19 260   II: 11286527-11286786
 

Other

0 CDSs

0 RNAi Result

12 Allele

Public Name
gk963801
gk963053
gk962684
gk154837
gk488039
gk552690
gk454814
gk559093
gk690812
gk850510
WBVar00552956
WBVar01311665

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00201624 11286527 11286786 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_11285577..11286526   950 II: 11285577-11286526 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_downregulated
  Transcripts depleted at neuron synapses (enriched at the somatic fragments) by comparing presynaptic and somatic cell fragments labeled with different protein markers and sorted by FACS. DESeq2, FDR < 0.05 WBPaper00059027:neuron-synapses_depleted

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00201624 11286527 11286786 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
260

1 Sequence Ontology Term