WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C47G2.5b.1 Sequence Name  C47G2.5b.1
Length (nt)  2815   Chromosome Location  II: 11297688-11301260
Chromosome . Primary Identifier  II Chromosome Location . Start  11297688
Chromosome Location . End  11301260 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C47G2.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008166 saps-1 C47G2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C47G2.5b C47G2.5b 2154   II: 11297700-11297836

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C47G2.5b.1 11297688 11301260 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon68759   149   II: 11297688-11297836 Caenorhabditis elegans
Exon68763   160   II: 11297883-11298042 Caenorhabditis elegans
Exon68766   120   II: 11298096-11298215 Caenorhabditis elegans
Exon68770   135   II: 11298263-11298397 Caenorhabditis elegans
Exon68772   216   II: 11298451-11298666 Caenorhabditis elegans
Exon68775   411   II: 11298722-11299132 Caenorhabditis elegans
Exon68778   297   II: 11299201-11299497 Caenorhabditis elegans
Exon68781   218   II: 11299560-11299777 Caenorhabditis elegans
Exon68783   212   II: 11299825-11300036 Caenorhabditis elegans
Exon68788   897   II: 11300364-11301260 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C47G2.5b.1 11297688 11301260 1

1 Sequence

Length
2815

1 Sequence Ontology Term

Identifier Name Description
transcript