WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C47G2.5c.1 Sequence Name  C47G2.5c.1
Length (nt)  2976   Chromosome Location  II: 11297700-11301250
Chromosome . Primary Identifier  II Chromosome Location . Start  11297700
Chromosome Location . End  11301250 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C47G2.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008166 saps-1 C47G2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C47G2.5c C47G2.5c 2337   II: 11297700-11297836

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C47G2.5c.1 11297700 11301250 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon68760   137   II: 11297700-11297836 Caenorhabditis elegans
Exon68764   160   II: 11297883-11298042 Caenorhabditis elegans
Exon68767   120   II: 11298096-11298215 Caenorhabditis elegans
Exon68768   141   II: 11298257-11298397 Caenorhabditis elegans
Exon68773   216   II: 11298451-11298666 Caenorhabditis elegans
Exon68776   411   II: 11298722-11299132 Caenorhabditis elegans
Exon68779   297   II: 11299201-11299497 Caenorhabditis elegans
Exon68782   218   II: 11299560-11299777 Caenorhabditis elegans
Exon68785   389   II: 11299825-11300213 Caenorhabditis elegans
Exon68786   887   II: 11300364-11301250 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C47G2.5c.1 11297700 11301250 1

1 Sequence

Length
2976

1 Sequence Ontology Term

Identifier Name Description
transcript