WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00197007 Gene Name  C33B4.9
Sequence Name  ? C33B4.9 Organism  Caenorhabditis elegans
Automated Description  Is affected by spt-16 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 150
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00197007

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C33B4.9 C33B4.9 150   II: 11372005-11372154
 

Other

0 CDSs

0 RNAi Result

9 Allele

Public Name
gk963801
gk963053
gk962684
gk963539
gk963879
gk575580
gk918237
gk875991
gk923616

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00197007 11372005 11372154 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_11372155..11375607   3453 II: 11372155-11375607 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in spt-16(RNAi) comparing to in vector control worm at L4 larva stage. DESeq 2, fold change > 4, adjusted p-value < 0.05. WBPaper00055013:spt-16(RNAi)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00197007 11372005 11372154 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
150

1 Sequence Ontology Term