WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C33B4.3b.1 Sequence Name  C33B4.3b.1
Length (nt)  3819   Chromosome Location  II: 11384466-11390965
Chromosome . Primary Identifier  II Chromosome Location . Start  11384466
Chromosome Location . End  11390965 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C33B4.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006444 shn-1 C33B4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C33B4.3b C33B4.3b 2982   II: 11385122-11385154

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C33B4.3b.1 11384466 11390965 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon68997   689   II: 11384466-11385154 Caenorhabditis elegans
Exon69003   148   II: 11386069-11386216 Caenorhabditis elegans
Exon69006   842   II: 11386701-11387542 Caenorhabditis elegans
Exon69010   323   II: 11387780-11388102 Caenorhabditis elegans
Exon69014   273   II: 11388610-11388882 Caenorhabditis elegans
Exon69017   342   II: 11388940-11389281 Caenorhabditis elegans
Exon69020   589   II: 11389328-11389916 Caenorhabditis elegans
Exon69023   102   II: 11389987-11390088 Caenorhabditis elegans
Exon69026   270   II: 11390348-11390617 Caenorhabditis elegans
Exon69030   241   II: 11390725-11390965 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C33B4.3b.1 11384466 11390965 -1

1 Sequence

Length
3819

1 Sequence Ontology Term

Identifier Name Description
transcript