WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C33B4.3c.1 Sequence Name  C33B4.3c.1
Length (nt)  3866   Chromosome Location  II: 11384562-11390864
Chromosome . Primary Identifier  II Chromosome Location . Start  11384562
Chromosome Location . End  11390864 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C33B4.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006444 shn-1 C33B4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C33B4.3c C33B4.3c 3423   II: 11384925-11385154

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C33B4.3c.1 11384562 11390864 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon68998   593   II: 11384562-11385154 Caenorhabditis elegans
Exon69001   154   II: 11385778-11385931 Caenorhabditis elegans
Exon69004   148   II: 11386069-11386216 Caenorhabditis elegans
Exon69007   842   II: 11386701-11387542 Caenorhabditis elegans
Exon69011   323   II: 11387780-11388102 Caenorhabditis elegans
Exon69012   90   II: 11388263-11388352 Caenorhabditis elegans
Exon69015   273   II: 11388610-11388882 Caenorhabditis elegans
Exon69018   342   II: 11388940-11389281 Caenorhabditis elegans
Exon69021   589   II: 11389328-11389916 Caenorhabditis elegans
Exon69024   102   II: 11389987-11390088 Caenorhabditis elegans
Exon69027   270   II: 11390348-11390617 Caenorhabditis elegans
Exon69029   140   II: 11390725-11390864 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C33B4.3c.1 11384562 11390864 -1

1 Sequence

Length
3866

1 Sequence Ontology Term

Identifier Name Description
transcript