WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C33B4.3a.1 Sequence Name  C33B4.3a.1
Length (nt)  3751   Chromosome Location  II: 11384585-11390862
Chromosome . Primary Identifier  II Chromosome Location . Start  11384585
Chromosome Location . End  11390862 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C33B4.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006444 shn-1 C33B4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C33B4.3a C33B4.3a 3333   II: 11384925-11385154

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C33B4.3a.1 11384585 11390862 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon68999   570   II: 11384585-11385154 Caenorhabditis elegans
Exon69000   154   II: 11385778-11385931 Caenorhabditis elegans
Exon69002   148   II: 11386069-11386216 Caenorhabditis elegans
Exon69005   842   II: 11386701-11387542 Caenorhabditis elegans
Exon69009   323   II: 11387780-11388102 Caenorhabditis elegans
Exon69013   273   II: 11388610-11388882 Caenorhabditis elegans
Exon69016   342   II: 11388940-11389281 Caenorhabditis elegans
Exon69019   589   II: 11389328-11389916 Caenorhabditis elegans
Exon69022   102   II: 11389987-11390088 Caenorhabditis elegans
Exon69025   270   II: 11390348-11390617 Caenorhabditis elegans
Exon69028   138   II: 11390725-11390862 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C33B4.3a.1 11384585 11390862 -1

1 Sequence

Length
3751

1 Sequence Ontology Term

Identifier Name Description
transcript