WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C05D12.3c.1 Sequence Name  C05D12.3c.1
Length (nt)  3981   Chromosome Location  II: 11425266-11432762
Chromosome . Primary Identifier  II Chromosome Location . Start  11425266
Chromosome Location . End  11432762 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C05D12.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00014666 C05D12.3 C05D12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05D12.3c C05D12.3c 3006   II: 11425281-11425335

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C05D12.3c.1 11425266 11432762 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon69087   70   II: 11425266-11425335 Caenorhabditis elegans
Exon69093   94   II: 11425378-11425471 Caenorhabditis elegans
Exon69099   694   II: 11426375-11427068 Caenorhabditis elegans
Exon69104   204   II: 11427123-11427326 Caenorhabditis elegans
Exon69109   347   II: 11427374-11427720 Caenorhabditis elegans
Exon69114   68   II: 11427769-11427836 Caenorhabditis elegans
Exon69119   536   II: 11428020-11428555 Caenorhabditis elegans
Exon69124   123   II: 11428598-11428720 Caenorhabditis elegans
Exon69129   63   II: 11428769-11428831 Caenorhabditis elegans
Exon69134   181   II: 11428888-11429068 Caenorhabditis elegans
Exon69139   165   II: 11429116-11429280 Caenorhabditis elegans
Exon69144   90   II: 11429326-11429415 Caenorhabditis elegans
Exon69149   213   II: 11429726-11429938 Caenorhabditis elegans
Exon69153   150   II: 11429986-11430135 Caenorhabditis elegans
Exon69158   88   II: 11430531-11430618 Caenorhabditis elegans
Exon69162   895   II: 11431868-11432762 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C05D12.3c.1 11425266 11432762 1

1 Sequence

Length
3981

1 Sequence Ontology Term

Identifier Name Description
transcript