WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C05D12.3a.1 Sequence Name  C05D12.3a.1
Length (nt)  3188   Chromosome Location  II: 11425269-11430328
Chromosome . Primary Identifier  II Chromosome Location . Start  11425269
Chromosome Location . End  11430328 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C05D12.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00014666 C05D12.3 C05D12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05D12.3a C05D12.3a 3120   II: 11425281-11425335

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C05D12.3a.1 11425269 11430328 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon69089   67   II: 11425269-11425335 Caenorhabditis elegans
Exon69092   94   II: 11425378-11425471 Caenorhabditis elegans
Exon69098   694   II: 11426375-11427068 Caenorhabditis elegans
Exon69103   204   II: 11427123-11427326 Caenorhabditis elegans
Exon69108   347   II: 11427374-11427720 Caenorhabditis elegans
Exon69113   68   II: 11427769-11427836 Caenorhabditis elegans
Exon69118   536   II: 11428020-11428555 Caenorhabditis elegans
Exon69123   123   II: 11428598-11428720 Caenorhabditis elegans
Exon69128   63   II: 11428769-11428831 Caenorhabditis elegans
Exon69133   181   II: 11428888-11429068 Caenorhabditis elegans
Exon69138   165   II: 11429116-11429280 Caenorhabditis elegans
Exon69143   90   II: 11429326-11429415 Caenorhabditis elegans
Exon69148   213   II: 11429726-11429938 Caenorhabditis elegans
Exon69157   343   II: 11429986-11430328 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C05D12.3a.1 11425269 11430328 1

1 Sequence

Length
3188

1 Sequence Ontology Term

Identifier Name Description
transcript