WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C47D12.1b.1 Sequence Name  C47D12.1b.1
Length (nt)  12411   Chromosome Location  II: 11661569-11675856
Chromosome . Primary Identifier  II Chromosome Location . Start  11661569
Chromosome Location . End  11675856 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C47D12.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007028 trr-1 C47D12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C47D12.1b C47D12.1b 12180   II: 11661800-11661973

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C47D12.1b.1 11661569 11675856 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon69852   405   II: 11661569-11661973 Caenorhabditis elegans
Exon69856   445   II: 11662033-11662477 Caenorhabditis elegans
Exon69859   1385   II: 11662532-11663916 Caenorhabditis elegans
Exon69862   412   II: 11663972-11664383 Caenorhabditis elegans
Exon69865   734   II: 11664436-11665169 Caenorhabditis elegans
Exon69868   287   II: 11665218-11665504 Caenorhabditis elegans
Exon69871   337   II: 11665558-11665894 Caenorhabditis elegans
Exon69874   215   II: 11666508-11666722 Caenorhabditis elegans
Exon69877   894   II: 11666774-11667667 Caenorhabditis elegans
Exon69881   185   II: 11667709-11667893 Caenorhabditis elegans
Exon69884   146   II: 11667937-11668082 Caenorhabditis elegans
Exon69886   613   II: 11668133-11668745 Caenorhabditis elegans
Exon69889   114   II: 11668795-11668908 Caenorhabditis elegans
Exon69892   816   II: 11669001-11669816 Caenorhabditis elegans
Exon69895   2194   II: 11670084-11672277 Caenorhabditis elegans
Exon69899   376   II: 11672332-11672707 Caenorhabditis elegans
Exon69902   387   II: 11672769-11673155 Caenorhabditis elegans
Exon69904   1119   II: 11673201-11674319 Caenorhabditis elegans
Exon69907   124   II: 11674364-11674487 Caenorhabditis elegans
Exon69910   299   II: 11674533-11674831 Caenorhabditis elegans
Exon69913   786   II: 11674886-11675671 Caenorhabditis elegans
Exon69915   138   II: 11675719-11675856 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C47D12.1b.1 11661569 11675856 -1

1 Sequence

Length
12411

1 Sequence Ontology Term

Identifier Name Description
transcript