WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C47D12.1a.1 Sequence Name  C47D12.1a.1
Length (nt)  12478   Chromosome Location  II: 11661582-11675927
Chromosome . Primary Identifier  II Chromosome Location . Start  11661582
Chromosome Location . End  11675927 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C47D12.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007028 trr-1 C47D12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C47D12.1a C47D12.1a 12189   II: 11661800-11661982

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C47D12.1a.1 11661582 11675927 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon69853   401   II: 11661582-11661982 Caenorhabditis elegans
Exon69855   445   II: 11662033-11662477 Caenorhabditis elegans
Exon69858   1385   II: 11662532-11663916 Caenorhabditis elegans
Exon69861   412   II: 11663972-11664383 Caenorhabditis elegans
Exon69864   734   II: 11664436-11665169 Caenorhabditis elegans
Exon69867   287   II: 11665218-11665504 Caenorhabditis elegans
Exon69870   337   II: 11665558-11665894 Caenorhabditis elegans
Exon69873   215   II: 11666508-11666722 Caenorhabditis elegans
Exon69876   894   II: 11666774-11667667 Caenorhabditis elegans
Exon69880   185   II: 11667709-11667893 Caenorhabditis elegans
Exon69883   146   II: 11667937-11668082 Caenorhabditis elegans
Exon69885   613   II: 11668133-11668745 Caenorhabditis elegans
Exon69888   114   II: 11668795-11668908 Caenorhabditis elegans
Exon69891   816   II: 11669001-11669816 Caenorhabditis elegans
Exon69894   2194   II: 11670084-11672277 Caenorhabditis elegans
Exon69898   376   II: 11672332-11672707 Caenorhabditis elegans
Exon69901   387   II: 11672769-11673155 Caenorhabditis elegans
Exon69903   1119   II: 11673201-11674319 Caenorhabditis elegans
Exon69906   124   II: 11674364-11674487 Caenorhabditis elegans
Exon69909   299   II: 11674533-11674831 Caenorhabditis elegans
Exon69912   786   II: 11674886-11675671 Caenorhabditis elegans
Exon69917   209   II: 11675719-11675927 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C47D12.1a.1 11661582 11675927 -1

1 Sequence

Length
12478

1 Sequence Ontology Term

Identifier Name Description
transcript