WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C47D12.1c.1 Sequence Name  C47D12.1c.1
Length (nt)  12156   Chromosome Location  II: 11661800-11675856
Chromosome . Primary Identifier  II Chromosome Location . Start  11661800
Chromosome Location . End  11675856 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C47D12.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007028 trr-1 C47D12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C47D12.1c C47D12.1c 12156   II: 11661800-11661982

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C47D12.1c.1 11661800 11675856 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

22 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon69854   183   II: 11661800-11661982 Caenorhabditis elegans
Exon69857   445   II: 11662033-11662477 Caenorhabditis elegans
Exon69860   1385   II: 11662532-11663916 Caenorhabditis elegans
Exon69863   412   II: 11663972-11664383 Caenorhabditis elegans
Exon69866   734   II: 11664436-11665169 Caenorhabditis elegans
Exon69869   287   II: 11665218-11665504 Caenorhabditis elegans
Exon69872   337   II: 11665558-11665894 Caenorhabditis elegans
Exon69875   215   II: 11666508-11666722 Caenorhabditis elegans
Exon69878   894   II: 11666774-11667667 Caenorhabditis elegans
Exon69879   179   II: 11667709-11667887 Caenorhabditis elegans
Exon69882   137   II: 11667937-11668073 Caenorhabditis elegans
Exon69887   613   II: 11668133-11668745 Caenorhabditis elegans
Exon69890   114   II: 11668795-11668908 Caenorhabditis elegans
Exon69893   816   II: 11669001-11669816 Caenorhabditis elegans
Exon69896   2194   II: 11670084-11672277 Caenorhabditis elegans
Exon69897   367   II: 11672332-11672698 Caenorhabditis elegans
Exon69900   378   II: 11672769-11673146 Caenorhabditis elegans
Exon69905   1119   II: 11673201-11674319 Caenorhabditis elegans
Exon69908   124   II: 11674364-11674487 Caenorhabditis elegans
Exon69911   299   II: 11674533-11674831 Caenorhabditis elegans
Exon69914   786   II: 11674886-11675671 Caenorhabditis elegans
Exon69916   138   II: 11675719-11675856 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C47D12.1c.1 11661800 11675856 -1

1 Sequence

Length
12156

1 Sequence Ontology Term

Identifier Name Description
transcript