WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C47D12.8.2 Sequence Name  C47D12.8.2
Length (nt)  2879   Chromosome Location  II: 11696171-11705351
Chromosome . Primary Identifier  II Chromosome Location . Start  11696171
Chromosome Location . End  11705351 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C47D12.8.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008140 xpf-1 C47D12.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C47D12.8 C47D12.8 2808   II: 11696171-11696610

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C47D12.8.2 11696171 11705351 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon69974   440   II: 11696171-11696610 Caenorhabditis elegans
Exon69976   740   II: 11696666-11697405 Caenorhabditis elegans
Exon69978   377   II: 11697920-11698296 Caenorhabditis elegans
Exon69983   90   II: 11700599-11700688 Caenorhabditis elegans
Exon69985   126   II: 11700734-11700859 Caenorhabditis elegans
Exon69988   138   II: 11701500-11701637 Caenorhabditis elegans
Exon69990   150   II: 11701688-11701837 Caenorhabditis elegans
Exon69992   87   II: 11702583-11702669 Caenorhabditis elegans
Exon69994   105   II: 11702720-11702824 Caenorhabditis elegans
Exon69996   216   II: 11703565-11703780 Caenorhabditis elegans
Exon69998   216   II: 11704081-11704296 Caenorhabditis elegans
Exon69999   194   II: 11705158-11705351 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C47D12.8.2 11696171 11705351 1

1 Sequence

Length
2879

1 Sequence Ontology Term

Identifier Name Description
transcript