WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27D12.2b.1 Sequence Name  T27D12.2b.1
Length (nt)  3063   Chromosome Location  II: 11846508-11854745
Chromosome . Primary Identifier  II Chromosome Location . Start  11846508
Chromosome Location . End  11854745 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27D12.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000528 clh-1 T27D12.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27D12.2b T27D12.2b 2709   II: 11846859-11846974

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27D12.2b.1 11846508 11854745 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon70260   467   II: 11846508-11846974 Caenorhabditis elegans
Exon70267   184   II: 11847031-11847214 Caenorhabditis elegans
Exon70274   108   II: 11847278-11847385 Caenorhabditis elegans
Exon70281   63   II: 11847429-11847491 Caenorhabditis elegans
Exon70287   115   II: 11847722-11847836 Caenorhabditis elegans
Exon70295   45   II: 11847982-11848026 Caenorhabditis elegans
Exon70304   237   II: 11848423-11848659 Caenorhabditis elegans
Exon70311   639   II: 11848714-11849352 Caenorhabditis elegans
Exon70318   102   II: 11849863-11849964 Caenorhabditis elegans
Exon70325   217   II: 11850107-11850323 Caenorhabditis elegans
Exon70332   163   II: 11850367-11850529 Caenorhabditis elegans
Exon70339   134   II: 11850636-11850769 Caenorhabditis elegans
Exon70346   132   II: 11850820-11850951 Caenorhabditis elegans
Exon70353   120   II: 11850998-11851117 Caenorhabditis elegans
Exon70360   149   II: 11851163-11851311 Caenorhabditis elegans
Exon70369   57   II: 11854514-11854570 Caenorhabditis elegans
Exon70375   131   II: 11854615-11854745 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27D12.2b.1 11846508 11854745 -1

1 Sequence

Length
3063

1 Sequence Ontology Term

Identifier Name Description
transcript