WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27D12.2a.1 Sequence Name  T27D12.2a.1
Length (nt)  3066   Chromosome Location  II: 11846515-11854743
Chromosome . Primary Identifier  II Chromosome Location . Start  11846515
Chromosome Location . End  11854743 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27D12.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000528 clh-1 T27D12.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27D12.2a T27D12.2a 2721   II: 11846859-11846974

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27D12.2a.1 11846515 11854743 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon70261   460   II: 11846515-11846974 Caenorhabditis elegans
Exon70266   184   II: 11847031-11847214 Caenorhabditis elegans
Exon70273   108   II: 11847278-11847385 Caenorhabditis elegans
Exon70280   63   II: 11847429-11847491 Caenorhabditis elegans
Exon70291   127   II: 11847722-11847848 Caenorhabditis elegans
Exon70294   45   II: 11847982-11848026 Caenorhabditis elegans
Exon70303   237   II: 11848423-11848659 Caenorhabditis elegans
Exon70310   639   II: 11848714-11849352 Caenorhabditis elegans
Exon70317   102   II: 11849863-11849964 Caenorhabditis elegans
Exon70324   217   II: 11850107-11850323 Caenorhabditis elegans
Exon70331   163   II: 11850367-11850529 Caenorhabditis elegans
Exon70338   134   II: 11850636-11850769 Caenorhabditis elegans
Exon70345   132   II: 11850820-11850951 Caenorhabditis elegans
Exon70352   120   II: 11850998-11851117 Caenorhabditis elegans
Exon70359   149   II: 11851163-11851311 Caenorhabditis elegans
Exon70368   57   II: 11854514-11854570 Caenorhabditis elegans
Exon70372   129   II: 11854615-11854743 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27D12.2a.1 11846515 11854743 -1

1 Sequence

Length
3066

1 Sequence Ontology Term

Identifier Name Description
transcript