WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27D12.2f.1 Sequence Name  T27D12.2f.1
Length (nt)  2553   Chromosome Location  II: 11846859-11851673
Chromosome . Primary Identifier  II Chromosome Location . Start  11846859
Chromosome Location . End  11851673 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27D12.2f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000528 clh-1 T27D12.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27D12.2f T27D12.2f 2553   II: 11846859-11846974

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27D12.2f.1 11846859 11851673 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon70262   116   II: 11846859-11846974 Caenorhabditis elegans
Exon70271   184   II: 11847031-11847214 Caenorhabditis elegans
Exon70278   108   II: 11847278-11847385 Caenorhabditis elegans
Exon70285   63   II: 11847429-11847491 Caenorhabditis elegans
Exon70289   115   II: 11847722-11847836 Caenorhabditis elegans
Exon70299   45   II: 11847982-11848026 Caenorhabditis elegans
Exon70308   237   II: 11848423-11848659 Caenorhabditis elegans
Exon70315   639   II: 11848714-11849352 Caenorhabditis elegans
Exon70322   102   II: 11849863-11849964 Caenorhabditis elegans
Exon70329   217   II: 11850107-11850323 Caenorhabditis elegans
Exon70336   163   II: 11850367-11850529 Caenorhabditis elegans
Exon70343   134   II: 11850636-11850769 Caenorhabditis elegans
Exon70350   132   II: 11850820-11850951 Caenorhabditis elegans
Exon70357   120   II: 11850998-11851117 Caenorhabditis elegans
Exon70364   149   II: 11851163-11851311 Caenorhabditis elegans
Exon70366   29   II: 11851645-11851673 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27D12.2f.1 11846859 11851673 -1

1 Sequence

Length
2553

1 Sequence Ontology Term

Identifier Name Description
transcript