WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27D12.2d.1 Sequence Name  T27D12.2d.1
Length (nt)  2736   Chromosome Location  II: 11846859-11856461
Chromosome . Primary Identifier  II Chromosome Location . Start  11846859
Chromosome Location . End  11856461 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27D12.2d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000528 clh-1 T27D12.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27D12.2d T27D12.2d 2736   II: 11846859-11846974

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27D12.2d.1 11846859 11856461 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon70265   116   II: 11846859-11846974 Caenorhabditis elegans
Exon70269   184   II: 11847031-11847214 Caenorhabditis elegans
Exon70276   108   II: 11847278-11847385 Caenorhabditis elegans
Exon70283   63   II: 11847429-11847491 Caenorhabditis elegans
Exon70293   127   II: 11847722-11847848 Caenorhabditis elegans
Exon70297   45   II: 11847982-11848026 Caenorhabditis elegans
Exon70306   237   II: 11848423-11848659 Caenorhabditis elegans
Exon70313   639   II: 11848714-11849352 Caenorhabditis elegans
Exon70320   102   II: 11849863-11849964 Caenorhabditis elegans
Exon70327   217   II: 11850107-11850323 Caenorhabditis elegans
Exon70334   163   II: 11850367-11850529 Caenorhabditis elegans
Exon70341   134   II: 11850636-11850769 Caenorhabditis elegans
Exon70348   132   II: 11850820-11850951 Caenorhabditis elegans
Exon70355   120   II: 11850998-11851117 Caenorhabditis elegans
Exon70362   149   II: 11851163-11851311 Caenorhabditis elegans
Exon70377   200   II: 11856262-11856461 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27D12.2d.1 11846859 11856461 -1

1 Sequence

Length
2736

1 Sequence Ontology Term

Identifier Name Description
transcript