WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y17G7B.15a.1 Sequence Name  Y17G7B.15a.1
Length (nt)  2620   Chromosome Location  II: 12072170-12088868
Chromosome . Primary Identifier  II Chromosome Location . Start  12072170
Chromosome Location . End  12088868 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y17G7B.15a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000565 cnt-1 Y17G7B.15 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y17G7B.15a Y17G7B.15a 2481   II: 12072302-12072458

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y17G7B.15a.1 12072170 12088868 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon70905   289   II: 12072170-12072458 Caenorhabditis elegans
Exon70909   111   II: 12072680-12072790 Caenorhabditis elegans
Exon70913   346   II: 12073633-12073978 Caenorhabditis elegans
Exon70918   582   II: 12075052-12075633 Caenorhabditis elegans
Exon70921   370   II: 12077244-12077613 Caenorhabditis elegans
Exon70924   132   II: 12078840-12078971 Caenorhabditis elegans
Exon70929   171   II: 12084169-12084339 Caenorhabditis elegans
Exon70930   90   II: 12086531-12086620 Caenorhabditis elegans
Exon70931   139   II: 12087503-12087641 Caenorhabditis elegans
Exon70932   177   II: 12088296-12088472 Caenorhabditis elegans
Exon70933   134   II: 12088611-12088744 Caenorhabditis elegans
Exon70934   79   II: 12088790-12088868 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y17G7B.15a.1 12072170 12088868 -1

1 Sequence

Length
2620

1 Sequence Ontology Term

Identifier Name Description
transcript