WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:Y57A10A.18e.1 Sequence Name  Y57A10A.18e.1
Length (nt)  5197   Chromosome Location  II: 12209098-12221788
Chromosome . Primary Identifier  II Chromosome Location . Start  12209098
Chromosome Location . End  12221788 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y57A10A.18e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004167 pqn-87 Y57A10A.18 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y57A10A.18e Y57A10A.18e 4452   II: 12209688-12209830

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y57A10A.18e.1 12209098 12221788 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon71133   733   II: 12209098-12209830 Caenorhabditis elegans
Exon71140   361   II: 12210813-12211173 Caenorhabditis elegans
Exon71147   589   II: 12211790-12212378 Caenorhabditis elegans
Exon71153   1577   II: 12213392-12214968 Caenorhabditis elegans
Exon71157   111   II: 12215656-12215766 Caenorhabditis elegans
Exon71165   302   II: 12215890-12216191 Caenorhabditis elegans
Exon71171   50   II: 12217143-12217192 Caenorhabditis elegans
Exon71177   470   II: 12217253-12217722 Caenorhabditis elegans
Exon71183   139   II: 12218710-12218848 Caenorhabditis elegans
Exon71189   275   II: 12219391-12219665 Caenorhabditis elegans
Exon71195   186   II: 12219858-12220043 Caenorhabditis elegans
Exon71201   95   II: 12220295-12220389 Caenorhabditis elegans
Exon71207   113   II: 12220530-12220642 Caenorhabditis elegans
Exon71209   196   II: 12221593-12221788 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y57A10A.18e.1 12209098 12221788 -1

1 Sequence

Length
5197

1 Sequence Ontology Term

Identifier Name Description
transcript